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Francisella tularensis subsp. novicida U112

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Gene Functional categories
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Alternative Views 6-frame translation
Experimental Data Transposon insertions Proteome

FTN_0003

Transposon insertions   [View surrounding nucleotides]
Strain Transposon Type Sequence Confirmation Direction Position Position relative to ORF Junction info Position info BEI catalog #
tnfn1_pw060419p04q150 T18 (ISFn2) Confirmed R 3268 777(1251) EXACT(0) EXACT(0) NR-7219
tnfn1_pw060328p04q163 T20 (ISFn2/FRT) Confirmed R 3679 366(1251) EXACT(0) EXACT(0) NR-6080
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Identification
Gene Name -
Locus Tag FTN_0003
Accession # YP_897668.1
Genbank 118496618
pid 118496618
Structural Characteristics
Location 2791 - 4044
Length 417 aa   1254 nt
Strand -
G+C 0.2823
KEGG Pathways
External Annotations
NCBI
MetaCyc
Synteny Tool
Functional Characteristics
Description metabolite:H+ symporter (MHS) family protein
Note -
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PFAM -
Prosite
Label PS Number Domain Name Type Domain Definition
M1 PS50850 MFS MATRIX Major facilitator superfamily (MFS) profile

TMHMM
Transmembrane Domains Start End N-Terminus
12 21 41 Inside
46 73 Outside
82 101 Inside
110 137 Outside
150 170 Inside
182 201 Outside
236 256 Inside
273 293 Outside
302 322 Inside
328 348 Outside
369 389 Inside
392 412 Outside

SignalP
Signal Score Position
N 0.019 37

GO
Rank Cellular Component Molecular Function Biological Process
1 GO:0005623-cell GO:0005215-transporter activity GO:0007582-physiological process GO:0009987-cellular process
2 GO:0016020-membrane GO:0051179-localization
3 GO:0050875-cellular physiological process GO:0051234-establishment of localization
4 GO:0008151-cell growth and/or maintenance
7 GO:0006810-transport

COG
COG Number Domain Name Domain Desc COG Category E Value Percent Identity Alignment Length Query Begin Query End Domain Begin Domain End
COG2814 AraJ Arabinose efflux permease Carbohydrate transport and metabolism 7e-07 17.48 349 65 411 63 384

PSort
Final Localization Final Score HMMTop Signal Cytoplasmmic Score Cytoplasmic Membrane Score Periplasmic Score Outer Membrane Score Extracellular Score
CytoplasmicMembrane 10.00 12 internal helices found No signal peptide detected 0.00 10.00 0.00 0.00 0.00

Sequences   [View surrounding nucleotides]
Protein Sequence
MSKSNFRKNILPALVGNISDWYEFYMYGMFAAPVIAKLFLPQQEYFIALLYTYLTFTLGFFIRPLGALFFGYFSDKYGRKKILFYSLLLM
GIPTLFMALLPTYASIGIYAPIFLMLIRILQGFAVGGEIGGAAAFILESSNKNRQNISGALLISSSFFALLLASSISYCLLKLLSNNQIL
EWGWRIPFIFGFIIILSGLYIRYKSSETQEFLDLKTKKATIKNPISDAIKYEWNNMIITFFLSSLIAVLVFMGISYMPTYASHYLHYDFK
HVLLICTLNIIVLMLSSIIFGYIADRIGGKKVLMYSCIVLFIAVLPIYQIIIKNHQLVSIAIFSLAIISGAVIGPIFANTAGLFPVRNRN
TGFGISFNISVSLFGGTVAFLMTLLITTTGNYLIPAFYIMFLCIPFFIALLFIPKGL

Nucleotide Sequence
ATGAGTAAGAGCAATTTTAGAAAAAATATATTACCAGCATTAGTTGGAAATATCTCAGATTGGTATGAGTTTTATATGTATGGTATGTTT
GCTGCGCCAGTTATTGCTAAGCTATTTTTACCACAACAAGAATACTTTATAGCTCTTTTATATACATACTTAACCTTTACTTTAGGTTTT
TTTATTAGACCCTTAGGAGCCCTCTTCTTTGGCTATTTTAGCGATAAATATGGCAGAAAAAAAATATTATTCTACTCGTTATTACTTATG
GGTATACCAACTCTATTTATGGCTTTACTTCCAACCTATGCCTCTATAGGTATATATGCTCCTATATTTCTGATGCTTATCAGAATATTA
CAAGGATTTGCTGTTGGTGGAGAAATTGGTGGAGCAGCTGCATTTATTTTAGAAAGCTCTAATAAAAATAGACAAAATATTTCTGGCGCT
CTACTTATAAGTTCTTCTTTTTTTGCTCTTTTATTGGCTAGCAGTATTAGTTATTGCTTATTAAAGTTATTGAGCAATAATCAAATATTA
GAGTGGGGATGGAGAATTCCTTTTATTTTTGGATTTATAATTATTCTTTCGGGATTATATATCAGATATAAATCATCAGAAACTCAAGAA
TTTTTGGATCTTAAAACAAAAAAAGCAACTATTAAAAATCCCATTAGTGACGCTATTAAATATGAATGGAATAATATGATTATTACTTTC
TTTCTATCATCATTAATAGCTGTATTAGTTTTTATGGGAATTTCATATATGCCCACCTATGCAAGTCATTATTTACATTATGATTTTAAG
CATGTATTACTGATTTGTACTCTTAATATAATAGTATTAATGCTTTCTTCAATTATATTTGGATATATTGCTGATAGAATTGGTGGTAAA
AAAGTTTTGATGTATTCTTGTATAGTCTTATTTATAGCTGTTTTACCAATATACCAAATTATTATAAAAAATCATCAATTAGTATCTATA
GCTATTTTTTCTCTTGCTATTATAAGTGGTGCTGTAATAGGACCTATATTTGCAAATACGGCAGGGTTATTTCCTGTTAGAAATAGAAAT
ACTGGTTTTGGAATAAGTTTTAATATAAGCGTTTCTTTATTTGGAGGTACTGTTGCCTTTCTTATGACTTTATTAATTACTACTACTGGA
AATTATCTAATCCCAGCTTTCTATATAATGTTCTTATGCATACCTTTTTTTATTGCTTTATTATTCATTCCAAAAGGCTTATAA

Nucleotide and Protein Sequence
atgagtaagagcaattttagaaaaaatatattaccagcattagttggaaatatctcagattggtatgagttttatatgtatggtatgttt
 M  S  K  S  N  F  R  K  N  I  L  P  A  L  V  G  N  I  S  D  W  Y  E  F  Y  M  Y  G  M  F 
gctgcgccagttattgctaagctatttttaccacaacaagaatactttatagctcttttatatacatacttaacctttactttaggtttt
 A  A  P  V  I  A  K  L  F  L  P  Q  Q  E  Y  F  I  A  L  L  Y  T  Y  L  T  F  T  L  G  F 
tttattagacccttaggagccctcttctttggctattttagcgataaatatggcagaaaaaaaatattattctactcgttattacttatg
 F  I  R  P  L  G  A  L  F  F  G  Y  F  S  D  K  Y  G  R  K  K  I  L  F  Y  S  L  L  L  M 
ggtataccaactctatttatggctttacttccaacctatgcctctataggtatatatgctcctatatttctgatgcttatcagaatatta
 G  I  P  T  L  F  M  A  L  L  P  T  Y  A  S  I  G  I  Y  A  P  I  F  L  M  L  I  R  I  L 
caaggatttgctgttggtggagaaattggtggagcagctgcatttattttagaaagctctaataaaaatagacaaaatatttctggcgct
 Q  G  F  A  V  G  G  E  I  G  G  A  A  A  F  I  L  E  S  S  N  K  N  R  Q  N  I  S  G  A 
ctacttataagttcttctttttttgctcttttattggctagcagtattagttattgcttattaaagttattgagcaataatcaaatatta
 L  L  I  S  S  S  F  F  A  L  L  L  A  S  S  I  S  Y  C  L  L  K  L  L  S  N  N  Q  I  L 
gagtggggatggagaattccttttatttttggatttataattattctttcgggattatatatcagatataaatcatcagaaactcaagaa
 E  W  G  W  R  I  P  F  I  F  G  F  I  I  I  L  S  G  L  Y  I  R  Y  K  S  S  E  T  Q  E 
tttttggatcttaaaacaaaaaaagcaactattaaaaatcccattagtgacgctattaaatatgaatggaataatatgattattactttc
 F  L  D  L  K  T  K  K  A  T  I  K  N  P  I  S  D  A  I  K  Y  E  W  N  N  M  I  I  T  F 
tttctatcatcattaatagctgtattagtttttatgggaatttcatatatgcccacctatgcaagtcattatttacattatgattttaag
 F  L  S  S  L  I  A  V  L  V  F  M  G  I  S  Y  M  P  T  Y  A  S  H  Y  L  H  Y  D  F  K 
catgtattactgatttgtactcttaatataatagtattaatgctttcttcaattatatttggatatattgctgatagaattggtggtaaa
 H  V  L  L  I  C  T  L  N  I  I  V  L  M  L  S  S  I  I  F  G  Y  I  A  D  R  I  G  G  K 
aaagttttgatgtattcttgtatagtcttatttatagctgttttaccaatataccaaattattataaaaaatcatcaattagtatctata
 K  V  L  M  Y  S  C  I  V  L  F  I  A  V  L  P  I  Y  Q  I  I  I  K  N  H  Q  L  V  S  I 
gctattttttctcttgctattataagtggtgctgtaataggacctatatttgcaaatacggcagggttatttcctgttagaaatagaaat
 A  I  F  S  L  A  I  I  S  G  A  V  I  G  P  I  F  A  N  T  A  G  L  F  P  V  R  N  R  N 
actggttttggaataagttttaatataagcgtttctttatttggaggtactgttgcctttcttatgactttattaattactactactgga
 T  G  F  G  I  S  F  N  I  S  V  S  L  F  G  G  T  V  A  F  L  M  T  L  L  I  T  T  T  G 
aattatctaatcccagctttctatataatgttcttatgcatacctttttttattgctttattattcattccaaaaggcttataa
 N  Y  L  I  P  A  F  Y  I  M  F  L  C  I  P  F  F  I  A  L  L  F  I  P  K  G  L  * 


BLAST Database:



nuc prot
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Query Sequence:

nt sequence aa sequence custom
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