Genomes

Organism	Strain	Institute	Last Updated	NCBI Files
Francisella tularensis subsp. holarctica	LVS	LLNL	2006-03-30	NC_007880
Francisella tularensis subsp. holarctica FTA	FTA	BioHealthBase	2007-12-13	NC_009749
Francisella tularensis subsp. holarctica OSU18	OSU18	Baylor College of Medicine	2006-09-25	NC_008369
Francisella tularensis subsp. novicida U112	U112	UWGC	2006-08-18	NC_008601
Francisella tularensis subsp. tularensis FSC198	FSC 198	University of Birmingham	2006-07-25	NC_008245
Francisella tularensis subsp. tularensis SCHU S4	Schu 4	Swedish Defense	2006-01-17	NC_006570
Francisella tularensis subsp. tularensis WY96-3418	WY96-3418	BioHealthBase	2007-03-31	NC_009257

Tools

Name	Description
Get surrounding sequence	Given a gene, other genome feature, or genome coordinate, displays in FASTA format the surrounding sequence a specified number of nucleotides upstream and downstream
Synteny Tool	Analyze potential regions of local synteny between the Francisella genomes and any other published bacterial genome

The genome viewer facilitates browsing the genome annotations of published Francisella genomes.

Annotations were obtained from NCBI. The genome viewer contains several features that facilitate navigation through the genome annotations and assist with genomic comparison:

Graphical visualization of features in genomic neighborhoods
Advanced search tool for finding genes, pseudogenes, IS elements, rRNA and tRNA
Ability to create text formatted reports and FASTA files from search results
BLAST tool for finding sequence similarities between the Francisella genomes and other published bacterial genomes
Color coded chromosome maps to facilitate jumping to various regions of each genome
Detailed lists of transposon insertions in F. novicida and transposon insertion mutant ordering system
Query tool for retrieving the nucleotide sequence surrounding a given gene, other genome feature, or genome coordinate
Detailed reports of annotation pipeline analysis results (e.g. GO terms, PFAM, COG) for F. novicida
6-Frame translation graphical representation with visualization of pipeline analysis results
Synteny tool for viewing syntenic regions between the various Francisella strains